Package: pctax 0.1.3
pctax: Professional Comprehensive Omics Data Analysis
Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and professional omics data analysis.
Authors:
pctax_0.1.3.tar.gz
pctax_0.1.3.zip(r-4.5)pctax_0.1.3.zip(r-4.4)pctax_0.1.3.zip(r-4.3)
pctax_0.1.3.tgz(r-4.4-any)pctax_0.1.3.tgz(r-4.3-any)
pctax_0.1.3.tar.gz(r-4.5-noble)pctax_0.1.3.tar.gz(r-4.4-noble)
pctax_0.1.3.tgz(r-4.4-emscripten)pctax_0.1.3.tgz(r-4.3-emscripten)
pctax.pdf |pctax.html✨
pctax/json (API)
NEWS
# Install 'pctax' in R: |
install.packages('pctax', repos = c('https://asa12138.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/asa12138/pctax/issues
- all_ec_info - All element cycle information.
- all_sp_la_zh_name - All species latin names and chinese names
- pc_tax1 - Test data (pc_otu class) for pc_tax package.
microbiomesoftwarevisualizationomics
Last updated 3 days agofrom:e209b689a8. Checks:OK: 1 ERROR: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-win | ERROR | Nov 20 2024 |
R-4.5-linux | ERROR | Nov 20 2024 |
R-4.4-win | ERROR | Nov 20 2024 |
R-4.4-mac | ERROR | Nov 20 2024 |
R-4.3-win | ERROR | Nov 20 2024 |
R-4.3-mac | ERROR | Nov 20 2024 |
Exports:%<>%%>%a_diversityadd_stripadd_taxALDEXann_treeaoras.b_distb_analyseb_NTI1b_res_3dbbttbefore_treecheck_taxonkitconvert_taxon_namecor_netdf2treedf2tree1diff_dadownload_taxonkit_dataseteasy_treeenvfittgene2idgeo_simget_diff_typegp_dis_densitygrap_p_testinstall_taxonkitkwtestload_N_datam_group_envmat_distmicro_sbatchmulti_barmyCAPmyCCAmyRDAname_or_id2dfncmnstnti_rcpc_otupc_validpermanovaplot_element_cycleplot_N_cycleplot_two_treepre_fastppre_GEOpre_tax_tableprocrustes_analyserare_curve_samplerare_curve_speciesrarefactionRCbray1RDA_plotsangji_plotsuijisenlinsunbursttax_lcataxonkit_filtertaxonkit_lcataxonkit_lineagetaxonkit_listtaxonkit_name2taxidtaxonkit_reformattime_by_cmvolcano_pz_diversityz_diversity_decay
Dependencies:abindade4backportsbootbroomcarcarDatacliclustercolorspacecorrplotcowplotcpp11DerivdoBydplyrfansifarverFormulagenericsggnewscaleggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmunsellnlmenloptrnnetnumDerivpbkrtestpcutilspermutepillarpixmappkgconfigplyrpolynompurrrquantregR6RColorBrewerRcppRcppArmadilloRcppEigenreshape2rlangrstatixscalesspSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsveganviridisLitewithr