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  "Description": "Provides a comprehensive suite of tools for analyzing\nomics data. It includes functionalities for alpha diversity\nanalysis, beta diversity analysis, differential abundance\nanalysis, community assembly analysis, visualization of\nphylogenetic tree, and functional enrichment analysis. With a\nprogressive approach, the package offers a range of analysis\nmethods to explore and understand the complex communities. It\nis designed to support researchers and practitioners in\nconducting in-depth and professional omics data analysis.",
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      "table": false,
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      "topics": [
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        "easy_tree"
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        "aor.data.frame",
        "plot.AOR"
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      "title": "Transfer dist to b_dist",
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        "plot.b_dist",
        "plot.dist"
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      "page": "as.dist.b_dist",
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      "topics": [
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      "title": "Beta_diversity Ordination: dimensionality reduction",
      "topics": [
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        "b_analyse.data.frame"
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    {
      "page": "b_NTI1",
      "title": "Calculate beta_NTI",
      "topics": [
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    {
      "page": "b_res_3d",
      "title": "3D plot for b_res",
      "topics": [
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      "page": "batch_mediate",
      "title": "Batch mediate",
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      "page": "bbtt",
      "title": "ggdotchart for diff analysis",
      "topics": [
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      "page": "before_tree",
      "title": "Before df2tree check",
      "topics": [
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    {
      "page": "check_taxonkit",
      "title": "Check taxonkit",
      "concept": [
        "Rtaxonkit"
      ],
      "topics": [
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      "page": "convert_taxon_name",
      "title": "Convert taxon names between Chinese and Latin",
      "topics": [
        "convert_taxon_name"
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    {
      "page": "cor_net",
      "title": "Correlation network, species-interaction network for omics",
      "topics": [
        "cor_net"
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      "page": "df2tree",
      "title": "From a dataframe to construct a phylo",
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        "df2tree"
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    {
      "page": "df2tree1",
      "title": "From a dataframe to construct a phylo (save nwk)",
      "topics": [
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      "topics": [
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      "title": "Download taxonkit dataset",
      "concept": [
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      "title": "Drop Tips and Update a Phylogenetic Tree",
      "topics": [
        "drop_tips_update"
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      "page": "envfitt",
      "title": "Envfit test for RDA result",
      "topics": [
        "envfitt"
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    },
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      "page": "gene2id",
      "title": "Gene symbolid transfer to entrezIDs (human gene)",
      "topics": [
        "gene2id"
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    },
    {
      "page": "geo_sim",
      "title": "Lm for sample similarity and geographical distance",
      "topics": [
        "geo_sim"
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    {
      "page": "get_all_sp_la_zh_name",
      "title": "get all species Latin and Chinese name from the CCTCC database",
      "topics": [
        "get_all_sp_la_zh_name"
      ]
    },
    {
      "page": "get_diff_type",
      "title": "Get mean and type",
      "topics": [
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    },
    {
      "page": "gp_dis_density",
      "title": "Group inter-intra density",
      "topics": [
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    },
    {
      "page": "grap_p_test",
      "title": "Performs graph-based permutation tests",
      "topics": [
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      "page": "install_taxonkit",
      "title": "Install taxonkit",
      "concept": [
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      "topics": [
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    {
      "page": "kwtest",
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      "topics": [
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    {
      "page": "load_mpa_df",
      "title": "Load a metaphlan format data.frame",
      "topics": [
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    },
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      "page": "load_N_data",
      "title": "Load N-cycle data",
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    },
    {
      "page": "m_group_env",
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