Package: MetaNet 0.2.1
MetaNet: Network Analysis for Omics Data
Comprehensive network analysis package. Calculate correlation network fastly, accelerate lots of analysis by parallel computing. Support for multi-omics data, search sub-nets fluently. Handle bigger data, more than 10,000 nodes in each omics. Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize. Provide comprehensive topology indexes calculation, including ecological network stability.
Authors:
MetaNet_0.2.1.tar.gz
MetaNet_0.2.1.zip(r-4.5)MetaNet_0.2.1.zip(r-4.4)MetaNet_0.2.1.zip(r-4.3)
MetaNet_0.2.1.tgz(r-4.4-any)MetaNet_0.2.1.tgz(r-4.3-any)
MetaNet_0.2.1.tar.gz(r-4.5-noble)MetaNet_0.2.1.tar.gz(r-4.4-noble)
MetaNet_0.2.1.tgz(r-4.4-emscripten)MetaNet_0.2.1.tgz(r-4.3-emscripten)
MetaNet.pdf |MetaNet.html✨
MetaNet/json (API)
NEWS
# Install 'MetaNet' in R: |
install.packages('MetaNet', repos = c('https://asa12138.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/asa12138/metanet/issues
- arc_count - Edgelist
- arc_taxonomy - Edgelist
- co_net - MetaNet networks
- co_net2 - MetaNet networks
- co_net_rmt - MetaNet networks
- metab - MetaNet networks abundance
- metab_g - MetaNet networks metadata
- micro - MetaNet networks abundance
- micro_g - MetaNet networks metadata
- multi1 - MetaNet networks
- transc - MetaNet networks abundance
- transc_g - MetaNet networks metadata
dataimportnetwork analysisomicssoftwarevisualization
Last updated 4 months agofrom:dea2e92ba0. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 15 2024 |
R-4.5-win | NOTE | Oct 15 2024 |
R-4.5-linux | NOTE | Oct 15 2024 |
R-4.4-win | NOTE | Oct 15 2024 |
R-4.4-mac | NOTE | Oct 15 2024 |
R-4.3-win | NOTE | Oct 15 2024 |
R-4.3-mac | NOTE | Oct 15 2024 |
Exports:%<>%%>%anno_edgeanno_vertexas_arcas_circle_treeas_lineas_polyarcas_polycircleas_polygonas.ggigas.metanetc_net_annotatec_net_buildc_net_calc_net_calculatec_net_filterc_net_from_edgelistc_net_indexc_net_layc_net_layoutc_net_loadc_net_modulec_net_plotc_net_savec_net_setc_net_stabilityc_net_unionc_net_updatecal_simcheck_tabsclean_igraphclean_multi_edge_metanetCohesioncombine_n_modulecompare_randdf2net_treeextract_sample_netfast_corfilter_n_modulefit_powerg_layoutg_layout_backboneg_layout_circlepackg_layout_niceg_layout_polyarcg_layout_polycircleg_layout_polygong_layout_stressg_layout_treemapget_communityget_eget_group_skeletonget_moduleget_module_eigenget_nget_vinput_gephiis_metanetlinks_statmodule_detectmodule_eigenmodule_expressionmodule_netmulti_net_buildncnet_parnetD3plotolympic_rings_netp.adjust.tableplot_module_treerand_netrand_net_parread_corrrmtRMT_thresholdrobust_testrobustnesssave_corrshow_MetaNet_logoskeleton_plotsmallworldnesssumm_2colsummary_moduleto_module_nettwocol_edgelistvenn_netvulnerabilityzp_analysezp_plot
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggnewscaleggplot2ggrepelgluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepcutilspillarpkgconfigplyrpurrrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr