Package: pctax
Type: Package
Title: Professional Comprehensive Omics Data Analysis
Version: 0.1.8
Authors@R: 
    person("Chen", "Peng", email ="bfzede@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9449-7606"))
Description: Provides a comprehensive suite of tools for analyzing
        omics data. It includes functionalities for alpha diversity
        analysis, beta diversity analysis, differential abundance
        analysis, community assembly analysis, visualization of
        phylogenetic tree, and functional enrichment analysis. With a
        progressive approach, the package offers a range of analysis
        methods to explore and understand the complex communities. It
        is designed to support researchers and practitioners in
        conducting in-depth and professional omics data analysis.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.2.0)
LazyData: true
Imports: pcutils (>= 0.2.5), dplyr, readr, ggplot2 (>= 3.2.0), vegan,
        magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats,
        tibble, utils, ggpubr, patchwork, ggnewscale, ade4, scales
Suggests: picante, httr, NST, permute, aplot, ggfun, pheatmap, MASS,
        Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest,
        plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW,
        tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma,
        ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown,
        MetaNet, showtext, jsonlite, prettydoc, readxl, stringr,
        ggExtra, clipr, zetadiv, ggforce, gggenes, AnnotationDbi,
        org.Hs.eg.db, linkET, mediation, pairwiseAdonis, sankeyD3,
        Biobase, GEOquery
VignetteBuilder: knitr
BugReports: https://github.com/Asa12138/pctax/issues
URL: https://github.com/Asa12138/pctax
ByteCompile: true
biocViews: Microbiome, Software, Visualization
Config/pak/sysreqs: cmake make libicu-dev libx11-dev
Repository: https://asa12138.r-universe.dev
Date/Publication: 2026-04-03 08:03:14 UTC
RemoteUrl: https://github.com/asa12138/pctax
RemoteRef: HEAD
RemoteSha: 266e7db607c5a47b7f1bd7dd87a9f7173e0cc98b
NeedsCompilation: no
Packaged: 2026-07-02 08:21:53 UTC; root
Author: Chen Peng [aut, cre] (ORCID: <https://orcid.org/0000-0002-9449-7606>)
Maintainer: Chen Peng <bfzede@gmail.com>