library(ReporterScore)
#> [38;5;246mIf you use the ReporterScore package in published research, please cite:
#>
#> Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang, Generalized reporter score-based enrichment analysis for omics data, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae116, https://doi.org/10.1093/bib/bbae116 [39mGeneralized Reporter Score-based Enrichment Analysis for Omics Data
To cite ‘ReporterScore’ in publications use:
C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
Please go to https://github.com/Asa12138/ReporterScore for more details.
If you have any questions/issues, please visit github issue tracker.
Here is the output of sessionInfo() on the system on which this document was compiled:
sessionInfo()
#> R version 4.6.0 (2026-04-24)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 24.04.4 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] ReporterScore_0.2.6 rmarkdown_2.31
#>
#> loaded via a namespace (and not attached):
#> [1] gtable_0.3.6 jsonlite_2.0.0 dplyr_1.2.1 compiler_4.6.0
#> [5] tidyselect_1.2.1 jquerylib_0.1.4 scales_1.4.0 yaml_2.3.12
#> [9] fastmap_1.2.0 ggplot2_4.0.3 R6_2.6.1 pcutils_0.2.9
#> [13] generics_0.1.4 knitr_1.51 tibble_3.3.1 maketools_1.3.2
#> [17] bslib_0.11.0 pillar_1.11.1 RColorBrewer_1.1-3 rlang_1.2.0
#> [21] cachem_1.1.0 xfun_0.57 sass_0.4.10 sys_3.4.3
#> [25] S7_0.2.2 otel_0.2.0 cli_3.6.6 magrittr_2.0.5
#> [29] digest_0.6.39 grid_4.6.0 lifecycle_1.0.5 vctrs_0.7.3
#> [33] evaluate_1.0.5 glue_1.8.1 farver_2.1.2 buildtools_1.0.0
#> [37] tools_4.6.0 pkgconfig_2.0.3 htmltools_0.5.9Patil, K. R. & Nielsen, J. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102, 2685–2689 (2005).
L. Liu, R. Zhu, D. Wu, Misuse of reporter score in microbial enrichment analysis. iMeta. 2, e95 (2023).